IL_8EKB_251

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_251 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2736

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8EKB|1|2A|C|2107
8EKB|1|2A|C|2108
8EKB|1|2A|U|2109
8EKB|1|2A|G|2110
*
8EKB|1|2A|C|2179
8EKB|1|2A|U|2180
8EKB|1|2A|G|2181
8EKB|1|2A|G|2182

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains