IL_8EKB_254

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8EKB|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_254 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5012

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8EKB|1|2A|C|2129
8EKB|1|2A|U|2130
8EKB|1|2A|G|2131
8EKB|1|2A|U|2132
8EKB|1|2A|G|2133
8EKB|1|2A|A|2134
8EKB|1|2A|A|2135
8EKB|1|2A|C|2136
*
8EKB|1|2A|G|2155
8EKB|1|2A|G|2156
8EKB|1|2A|G|2157
8EKB|1|2A|A|2158
8EKB|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains