IL_8EKC_098

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8EKC|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_098 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1089

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8EKC|1|A|C|2636
8EKC|1|A|U|2637
8EKC|1|A|G|2638
8EKC|1|A|A|2639
8EKC|1|A|G|2640
*
8EKC|1|A|C|2774
8EKC|1|A|G|2775
8EKC|1|A|A|2776
8EKC|1|A|G|2777
8EKC|1|A|A|2778
8EKC|1|A|U|2779
8EKC|1|A|G|2780
8EKC|1|A|A|2781
8EKC|1|A|G|2782

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L13