IL_8EKC_139
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8EKC|1|a|A|532, 8EKC|1|a|U|534, 8EKC|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EKC_139 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2684
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8EKC|1|a|G|515
8EKC|1|a|PSU|516
8EKC|1|a|G|517
8EKC|1|a|C|518
8EKC|1|a|C|519
8EKC|1|a|A|520
8EKC|1|a|G|521
*
8EKC|1|a|C|528
8EKC|1|a|G|529
8EKC|1|a|G|530
8EKC|1|a|U|531
8EKC|1|a|A|532
8EKC|1|a|A|533
8EKC|1|a|U|534
8EKC|1|a|A|535
8EKC|1|a|C|536
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain v
- M-F-Stop mRNA
- Chain w
- Transfer RNA; tRNA
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