3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
8EMM|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_030 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0617
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8EMM|1|A|U|605
8EMM|1|A|G|606
8EMM|1|A|A|607
8EMM|1|A|A|608
8EMM|1|A|A|609
8EMM|1|A|U|610
8EMM|1|A|C|611
8EMM|1|A|C|612
*
8EMM|1|A|G|628
8EMM|1|A|A|629
8EMM|1|A|A|630
8EMM|1|A|C|631
8EMM|1|A|U|632
8EMM|1|A|G|633

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain H
30S ribosomal protein S8
Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4104 s