3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GAAG*CGGACC
Length
10 nucleotides
Bulged bases
8EMM|1|A|A|1257, 8EMM|1|A|A|1280, 8EMM|1|A|C|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_056 not in the Motif Atlas
Homologous match to IL_5J7L_055
Geometric discrepancy: 0.1604
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

8EMM|1|A|G|1255
8EMM|1|A|A|1256
8EMM|1|A|A|1257
8EMM|1|A|G|1258
*
8EMM|1|A|C|1277
8EMM|1|A|G|1278
8EMM|1|A|G|1279
8EMM|1|A|A|1280
8EMM|1|A|C|1281
8EMM|1|A|C|1282

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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