3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
8EMM|1|a|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_163 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.0575
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

8EMM|1|a|C|2636
8EMM|1|a|U|2637
8EMM|1|a|G|2638
8EMM|1|a|A|2639
8EMM|1|a|G|2640
*
8EMM|1|a|C|2774
8EMM|1|a|G|2775
8EMM|1|a|A|2776
8EMM|1|a|G|2777
8EMM|1|a|A|2778
8EMM|1|a|U|2779
8EMM|1|a|G|2780
8EMM|1|a|A|2781
8EMM|1|a|G|2782

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13

Coloring options:


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