IL_8ETI_020

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUA*UAU

Length

7 nucleotides

Bulged bases

8ETI|1|1|G|465

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_020 not in the Motif Atlas

Geometric match to IL_2H1M_002

Geometric discrepancy: 0.2139

The information below is about IL_2H1M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8ETI|1|1|A|464
8ETI|1|1|G|465
8ETI|1|1|U|466
8ETI|1|1|A|467
*
8ETI|1|1|U|483
8ETI|1|1|A|484
8ETI|1|1|U|485

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain 5

Ribosome biogenesis protein nsa1