IL_8ETI_035
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ETI_035 not in the Motif Atlas
- Geometric match to IL_5TBW_049
- Geometric discrepancy: 0.1301
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8ETI|1|1|U|1204
8ETI|1|1|G|1205
8ETI|1|1|C|1206
8ETI|1|1|C|1207
8ETI|1|1|G|1208
8ETI|1|1|G|1209
8ETI|1|1|A|1210
8ETI|1|1|A|1211
*
8ETI|1|1|U|1356
8ETI|1|1|A|1357
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain F
- 60S ribosomal protein L7-B
- Chain O
- 60S ribosomal protein L16-B
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-B
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