IL_8ETI_053
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAU*AGAAAG
- Length
- 10 nucleotides
- Bulged bases
- 8ETI|1|1|A|3238, 8ETI|1|1|A|3239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ETI_053 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.2147
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8ETI|1|1|C|3100
8ETI|1|1|A|3101
8ETI|1|1|A|3102
8ETI|1|1|U|3103
*
8ETI|1|1|A|3235
8ETI|1|1|G|3236
8ETI|1|1|A|3237
8ETI|1|1|A|3238
8ETI|1|1|A|3239
8ETI|1|1|G|3240
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain B
- 60S ribosomal protein L3-A
- Chain O
- 60S ribosomal protein L16-B
Coloring options: