IL_8ETI_062

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_062 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1947

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8ETI|1|1|A|3401
8ETI|1|1|U|3402
8ETI|1|1|U|3403
8ETI|1|1|G|3404
*
8ETI|1|1|C|3412
8ETI|1|1|U|3413
8ETI|1|1|U|3414
8ETI|1|1|U|3415

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain B

60S ribosomal protein L3-A

Chain P

60S ribosomal protein L17-A