IL_8ETI_072

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGA*UUACC

Length

9 nucleotides

Bulged bases

8ETI|1|6|A|180, 8ETI|1|6|C|181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_072 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3888

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8ETI|1|6|G|103
8ETI|1|6|U|104
8ETI|1|6|G|105
8ETI|1|6|A|106
*
8ETI|1|6|U|178
8ETI|1|6|U|179
8ETI|1|6|A|180
8ETI|1|6|C|181
8ETI|1|6|C|182

Current chains

Chain 6

RNA (125-MER)

Nearby chains

Chain o

Uncharacterized RNA-binding protein C1827.05c

Chain t

60S ribosomal protein L7-A