IL_8EUB_056
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8EUB|1|A1|A|1221
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EUB_056 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.1625
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8EUB|1|A1|U|1218
8EUB|1|A1|C|1219
8EUB|1|A1|U|1220
8EUB|1|A1|A|1221
8EUB|1|A1|G|1222
8EUB|1|A1|A|1223
8EUB|1|A1|C|1224
8EUB|1|A1|A|1225
8EUB|1|A1|G|1226
*
8EUB|1|A1|C|1283
8EUB|1|A1|C|1284
8EUB|1|A1|G|1285
8EUB|1|A1|A|1286
8EUB|1|A1|A|1287
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain AS
- 60S ribosomal protein L20
- Chain Am
- Ubiquitin-60S ribosomal protein L40
- Chain VA
- 60S acidic ribosomal protein P0
Coloring options: