IL_8EV6_228

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_228 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3873

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8EV6|1|2A|G|1319
8EV6|1|2A|C|1320
8EV6|1|2A|A|1321
8EV6|1|2A|A|1322
8EV6|1|2A|U|1323
8EV6|1|2A|G|1324
*
8EV6|1|2A|C|1330
8EV6|1|2A|A|1331
8EV6|1|2A|G|1332
8EV6|1|2A|C|1333

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23