IL_8EVP_053
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8EVP|1|A1|C|1196, 8EVP|1|A1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_053 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0705
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|A1|G|1194
8EVP|1|A1|A|1195
8EVP|1|A1|C|1196
8EVP|1|A1|A|1197
8EVP|1|A1|C|1198
8EVP|1|A1|C|1199
8EVP|1|A1|A|1200
8EVP|1|A1|C|1201
8EVP|1|A1|A|1202
8EVP|1|A1|A|1203
8EVP|1|A1|A|1204
8EVP|1|A1|A|1205
*
8EVP|1|A1|U|1299
8EVP|1|A1|G|1300
8EVP|1|A1|A|1301
8EVP|1|A1|A|1302
8EVP|1|A1|A|1303
8EVP|1|A1|A|1304
8EVP|1|A1|U|1305
8EVP|1|A1|G|1306
8EVP|1|A1|G|1307
8EVP|1|A1|A|1308
8EVP|1|A1|U|1309
8EVP|1|A1|G|1310
8EVP|1|A1|G|1311
8EVP|1|A1|C|1312
8EVP|1|A1|G|1313
8EVP|1|A1|C|1314
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- 60S ribosomal protein L3
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- RPL10 isoform 1
- Chain AO
- 60S ribosomal protein L16-A
- Chain Af
- 60S ribosomal protein L33-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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