IL_8EVP_108
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_108 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.2015
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8EVP|1|A1|U|2718
8EVP|1|A1|U|2719
8EVP|1|A1|G|2720
8EVP|1|A1|A|2721
*
8EVP|1|A1|U|2735
8EVP|1|A1|A|2736
8EVP|1|A1|C|2737
8EVP|1|A1|A|2738
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- RPL5 isoform 1
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: