IL_8EVP_177

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8EVP|1|B5|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_177 not in the Motif Atlas

Geometric match to IL_5FQ5_002

Geometric discrepancy: 0.2984

The information below is about IL_5FQ5_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8EVP|1|B5|C|275
8EVP|1|B5|C|276
*
8EVP|1|B5|G|279
8EVP|1|B5|U|280
8EVP|1|B5|G|281

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A