IL_8EVP_200
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAAAAAAUU*AUAUU(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- 8EVP|1|B5|U|793, 8EVP|1|B5|U|794
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_200 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3301
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|G|750
8EVP|1|B5|A|751
8EVP|1|B5|A|752
8EVP|1|B5|A|753
8EVP|1|B5|A|754
8EVP|1|B5|A|755
8EVP|1|B5|A|756
8EVP|1|B5|U|757
8EVP|1|B5|U|758
*
8EVP|1|B5|A|790
8EVP|1|B5|U|791
8EVP|1|B5|A|792
8EVP|1|B5|U|793
8EVP|1|B5|U|794
8EVP|1|B5|A2M|795
8EVP|1|B5|G|796
8EVP|1|B5|C|797
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- RPS22A isoform 1
Coloring options: