IL_8EVP_227
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 8EVP|1|B5|A|2035
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_227 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.1276
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8EVP|1|B5|C|1887
8EVP|1|B5|4AC|1888
8EVP|1|B5|G|1889
*
8EVP|1|B5|C|2034
8EVP|1|B5|A|2035
8EVP|1|B5|OMG|2036
8EVP|1|B5|G|2037
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BD
- RPS3 isoform 1
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain EC
- Internal ribosome entry site
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