IL_8EVP_238

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8EVP|1|B5|C|2245, 8EVP|1|B5|A|2374

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_238 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.101

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8EVP|1|B5|C|2244
8EVP|1|B5|C|2245
8EVP|1|B5|G|2246
*
8EVP|1|B5|C|2372
8EVP|1|B5|A|2373
8EVP|1|B5|A|2374
8EVP|1|B5|G|2375

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Ba

RPS26B isoform 1

Chain EC

Internal ribosome entry site