IL_8EVP_268
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (OMG)UGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8EVP|1|B5|A|579
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_268 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1226
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8EVP|1|B5|OMG|562
8EVP|1|B5|U|563
8EVP|1|B5|G|564
8EVP|1|B5|C|565
8EVP|1|B5|C|566
8EVP|1|B5|A|567
8EVP|1|B5|G|568
*
8EVP|1|B5|C|575
8EVP|1|B5|G|576
8EVP|1|B5|G|577
8EVP|1|B5|OMU|578
8EVP|1|B5|A|579
8EVP|1|B5|A|580
8EVP|1|B5|U|581
8EVP|1|B5|U|582
8EVP|1|B5|C|583
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- Internal ribosome entry site
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