IL_8EVQ_238
3D structure
- PDB id
- 8EVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8EVQ|1|B5|A|1756||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVQ_238 not in the Motif Atlas
- Geometric match to IL_6CZR_141
- Geometric discrepancy: 0.3449
- The information below is about IL_6CZR_141
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
8EVQ|1|B5|C|1644
8EVQ|1|B5|G|1645
8EVQ|1|B5|C|1646
8EVQ|1|B5|U|1647
*
8EVQ|1|B5|A|1753
8EVQ|1|B5|A|1754
8EVQ|1|B5|A|1755
8EVQ|1|B5|A|1756||A
8EVQ|1|B5|G|1757
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain DC
- Elongation factor 2
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
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