IL_8EVR_208
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8EVR|1|B5|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVR_208 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1095
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8EVR|1|B5|C|874
8EVR|1|B5|G|875
8EVR|1|B5|G|876
8EVR|1|B5|G|877
8EVR|1|B5|G|878
*
8EVR|1|B5|C|950
8EVR|1|B5|A|951
8EVR|1|B5|A|952
8EVR|1|B5|G|953
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain Ac
- 60S ribosomal protein L30
- Chain BB
- RPS1A isoform 1
- Chain BN
- 40S ribosomal protein S13
- Chain Ba
- RPS26B isoform 1
Coloring options: