IL_8EVS_036
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8EVS|1|A1|A|920, 8EVS|1|A1|A|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVS_036 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0695
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8EVS|1|A1|G|907
8EVS|1|A1|OMG|908
8EVS|1|A1|G|909
*
8EVS|1|A1|U|919
8EVS|1|A1|A|920
8EVS|1|A1|A|921
8EVS|1|A1|U|922
8EVS|1|A1|C|923
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Aj
- 60S ribosomal protein L37-A
Coloring options: