IL_8EVS_056

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_056 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.1903

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8EVS|1|A1|G|1226
8EVS|1|A1|C|1227
8EVS|1|A1|C|1228
*
8EVS|1|A1|G|1281
8EVS|1|A1|G|1282
8EVS|1|A1|C|1283

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain V

60S acidic ribosomal protein P0