IL_8EVS_194

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_194 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0976

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8EVS|1|B5|G|616
8EVS|1|B5|U|617
8EVS|1|B5|U|618
8EVS|1|B5|A2M|619
8EVS|1|B5|A|620
8EVS|1|B5|A|621
8EVS|1|B5|A|622
*
8EVS|1|B5|U|1104
8EVS|1|B5|C|1105

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BX

40S ribosomal protein S23-A

Chain Ba

RPS26B isoform 1