IL_8EVS_226

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8EVS|1|A1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_226 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.1089

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8EVS|1|A1|U|1501
8EVS|1|A1|C|1502
8EVS|1|A1|A|1503
8EVS|1|A1|A|1504
8EVS|1|A1|C|1505
*
8EVS|1|A1|G|1513
8EVS|1|A1|G|1514
8EVS|1|A1|A|1515

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Al

60S ribosomal protein L39