IL_8EVS_242

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8EVS|1|A1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVS_242 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.2156

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8EVS|1|A1|G|1234
8EVS|1|A1|U|1235
8EVS|1|A1|G|1236
8EVS|1|A1|G|1237
8EVS|1|A1|C|1238
*
8EVS|1|A1|G|1250
8EVS|1|A1|A|1251
8EVS|1|A1|A|1252
8EVS|1|A1|U|1253
8EVS|1|A1|C|1254

Current chains

Chain A1

25S rRNA

Nearby chains

Chain V

60S acidic ribosomal protein P0