IL_8EVT_168

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8EVT|1|B5|C|114, 8EVT|1|B5|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_168 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.084

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8EVT|1|B5|U|113
8EVT|1|B5|C|114
8EVT|1|B5|G|115
8EVT|1|B5|U|116
*
8EVT|1|B5|A|300
8EVT|1|B5|A|301

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A