IL_8EVT_207
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVT_207 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.0851
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8EVT|1|B5|G|885
8EVT|1|B5|U|886
8EVT|1|B5|A|887
8EVT|1|B5|U|888
*
8EVT|1|B5|A|924
8EVT|1|B5|G|925
8EVT|1|B5|A|926
8EVT|1|B5|C|927
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain BB
- RPS1A isoform 1
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
Coloring options: