IL_8EWB_022
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8EWB|1|A1|U|534, 8EWB|1|A1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_022 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.107
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EWB|1|A1|G|531
8EWB|1|A1|A|532
8EWB|1|A1|A|533
8EWB|1|A1|U|534
8EWB|1|A1|G|535
8EWB|1|A1|U|536
8EWB|1|A1|A|537
8EWB|1|A1|G|538
*
8EWB|1|A1|U|553
8EWB|1|A1|A|554
8EWB|1|A1|U|555
8EWB|1|A1|U|556
8EWB|1|A1|A|557
8EWB|1|A1|U|558
8EWB|1|A1|A|559
8EWB|1|A1|G|560
8EWB|1|A1|C|561
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain AS
- 60S ribosomal protein L20
Coloring options: