IL_8EWB_101
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CAUA*UAUAG
- Length
- 9 nucleotides
- Bulged bases
- 8EWB|1|A1|A|2502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_101 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2842
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8EWB|1|A1|C|2444
8EWB|1|A1|A|2445
8EWB|1|A1|U|2446
8EWB|1|A1|A|2447
*
8EWB|1|A1|U|2499
8EWB|1|A1|A|2500
8EWB|1|A1|U|2501
8EWB|1|A1|A|2502
8EWB|1|A1|G|2503
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ai
- 60S ribosomal protein L36-A
- Chain E
- RPL1A isoform 1
Coloring options: