IL_8EWB_127

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8EWB|1|A1|A|3142, 8EWB|1|A1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_127 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0726

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8EWB|1|A1|C|3004
8EWB|1|A1|A|3005
8EWB|1|A1|A|3006
8EWB|1|A1|U|3007
*
8EWB|1|A1|A|3139
8EWB|1|A1|G|3140
8EWB|1|A1|A|3141
8EWB|1|A1|A|3142
8EWB|1|A1|C|3143
8EWB|1|A1|G|3144

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A