IL_8EWB_219
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8EWB|1|B5|C|1158, 8EWB|1|B5|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_219 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.116
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
8EWB|1|B5|A|1157
8EWB|1|B5|C|1158
8EWB|1|B5|C|1159
8EWB|1|B5|A|1160
*
8EWB|1|B5|U|1617
8EWB|1|B5|C|1618
8EWB|1|B5|C|1619
8EWB|1|B5|C|1620
8EWB|1|B5|U|1621
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain Ba
- RPS26B isoform 1
- Chain Bc
- RPS28A isoform 1
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
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