IL_8EWC_194

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_194 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1166

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8EWC|1|B5|G|616
8EWC|1|B5|U|617
8EWC|1|B5|U|618
8EWC|1|B5|A2M|619
8EWC|1|B5|A|620
8EWC|1|B5|A|621
8EWC|1|B5|A|622
*
8EWC|1|B5|U|1104
8EWC|1|B5|C|1105

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BX

40S ribosomal protein S23-A

Chain Ba

RPS26B isoform 1