IL_8EWC_206

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_206 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.094

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8EWC|1|B5|G|871
8EWC|1|B5|G|872
8EWC|1|B5|U|873
8EWC|1|B5|C|874
*
8EWC|1|B5|G|953
8EWC|1|B5|G|954
8EWC|1|B5|A|955
8EWC|1|B5|C|956

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain BN

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S27-A