IL_8EWC_222
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8EWC|1|B5|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_222 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.4857
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8EWC|1|B5|A|1224
8EWC|1|B5|U|1225
8EWC|1|B5|A|1226
8EWC|1|B5|A|1227
8EWC|1|B5|G|1228
8EWC|1|B5|G|1229
8EWC|1|B5|A|1230
8EWC|1|B5|U|1231
8EWC|1|B5|U|1232
8EWC|1|B5|G|1233
*
8EWC|1|B5|C|1252
8EWC|1|B5|U|1253
8EWC|1|B5|U|1254
8EWC|1|B5|G|1255
8EWC|1|B5|A|1256
8EWC|1|B5|U|1257
8EWC|1|B5|U|1258
8EWC|1|B5|U|1259
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain BM
- 40S ribosomal protein S12
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
Coloring options: