IL_8EWC_274
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8EWC|1|B5|C|1274, 8EWC|1|B5|U|1432, 8EWC|1|B5|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_274 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1121
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EWC|1|B5|U|1272
8EWC|1|B5|G|1273
8EWC|1|B5|C|1274
8EWC|1|B5|A|1275
8EWC|1|B5|U|1276
8EWC|1|B5|G|1277
8EWC|1|B5|G|1278
*
8EWC|1|B5|U|1430
8EWC|1|B5|C|1431
8EWC|1|B5|U|1432
8EWC|1|B5|G|1433
8EWC|1|B5|U|1434
8EWC|1|B5|G|1435
8EWC|1|B5|A|1436
8EWC|1|B5|U|1437
8EWC|1|B5|G|1438
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BK
- 40S ribosomal protein S10-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain EC
- internal ribosome entry site (IRES)
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