IL_8EYU_003
3D structure
- PDB id
- 8EYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Beetroot dimer bound to DFAME
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.95 Å
Loop
- Sequence
- AGGUGGGUGGU*AU
- Length
- 13 nucleotides
- Bulged bases
- 8EYU|1|B|U|19, 8EYU|1|B|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EYU_003 not in the Motif Atlas
- Geometric match to IL_8EYU_002
- Geometric discrepancy: 0.0965
- The information below is about IL_8EYU_002
- Detailed Annotation
- Part of G-quadruplex
- Broad Annotation
- No text annotation
- Motif group
- IL_19852.1
- Basepair signature
- cWW-tWH-cWW-cWH-cWH-cWH
- Number of instances in this motif group
- 1
Unit IDs
8EYU|1|B|A|16
8EYU|1|B|G|17
8EYU|1|B|G|18
8EYU|1|B|U|19
8EYU|1|B|G|20
8EYU|1|B|G|21
8EYU|1|B|G|22
8EYU|1|B|U|23
8EYU|1|B|G|24
8EYU|1|B|G|25
8EYU|1|B|U|26
*
8EYU|1|B|A|37
8EYU|1|B|U|38
Current chains
- Chain B
- RNA (49-MER)
Nearby chains
- Chain A
- RNA (49-MER)
Coloring options: