IL_8FC3_318

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8FC3|1|2a|A|532, 8FC3|1|2a|U|534, 8FC3|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_318 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2175

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8FC3|1|2a|G|515
8FC3|1|2a|PSU|516
8FC3|1|2a|G|517
8FC3|1|2a|C|518
8FC3|1|2a|C|519
8FC3|1|2a|A|520
8FC3|1|2a|G|521
*
8FC3|1|2a|C|528
8FC3|1|2a|G|529
8FC3|1|2a|G|530
8FC3|1|2a|U|531
8FC3|1|2a|A|532
8FC3|1|2a|A|533
8FC3|1|2a|U|534
8FC3|1|2a|A|535
8FC3|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A