3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
8FC5|1|1a|A|532, 8FC5|1|1a|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC5_134 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2208
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8FC5|1|1a|G|515
8FC5|1|1a|PSU|516
8FC5|1|1a|G|517
8FC5|1|1a|C|518
8FC5|1|1a|C|519
8FC5|1|1a|A|520
8FC5|1|1a|G|521
*
8FC5|1|1a|C|528
8FC5|1|1a|G|529
8FC5|1|1a|G|530
8FC5|1|1a|U|531
8FC5|1|1a|A|532
8FC5|1|1a|A|533
8FC5|1|1a|U|534
8FC5|1|1a|A|535
8FC5|1|1a|C|536

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1d
30S ribosomal protein S4
Chain 1l
30S ribosomal protein S12
Chain 1y
Ribosome-associated inhibitor A

Coloring options:


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