IL_8FC5_142

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

8FC5|1|1a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_142 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0826

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8FC5|1|1a|G|662
8FC5|1|1a|A|663
8FC5|1|1a|G|664
8FC5|1|1a|A|665
8FC5|1|1a|G|666
*
8FC5|1|1a|U|740
8FC5|1|1a|G|741
8FC5|1|1a|G|742
8FC5|1|1a|U|743

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1f

30S ribosomal protein S6

Chain 1o

30S ribosomal protein S15

Chain 1r

30S ribosomal protein S18