IL_8FC6_085

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC6_085 not in the Motif Atlas

Geometric match to IL_5ML7_006

Geometric discrepancy: 0.3966

The information below is about IL_5ML7_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8FC6|1|1A|G|2110
8FC6|1|1A|C|2111
8FC6|1|1A|G|2112
8FC6|1|1A|U|2113
8FC6|1|1A|A|2114
8FC6|1|1A|G|2115
8FC6|1|1A|G|2116
8FC6|1|1A|A|2117
8FC6|1|1A|U|2118
8FC6|1|1A|A|2119
8FC6|1|1A|G|2120
*
8FC6|1|1A|C|2178
8FC6|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains