IL_8FIZ_014

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8FIZ|1|AA|U|244, 8FIZ|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_014 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.2014

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8FIZ|1|AA|G|242
8FIZ|1|AA|A|243
8FIZ|1|AA|U|244
8FIZ|1|AA|U|245
8FIZ|1|AA|A|246
8FIZ|1|AA|G|247
*
8FIZ|1|AA|C|277
8FIZ|1|AA|G|278
8FIZ|1|AA|A|279
8FIZ|1|AA|C|280
8FIZ|1|AA|G|281
8FIZ|1|AA|A|282
8FIZ|1|AA|U|283
8FIZ|1|AA|C|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S12

Chain AS

30S ribosomal protein S17