IL_8FIZ_056

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8FIZ|1|AA|A|1257, 8FIZ|1|AA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_056 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1393

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|G|1255
8FIZ|1|AA|A|1256
8FIZ|1|AA|A|1257
8FIZ|1|AA|G|1258
*
8FIZ|1|AA|C|1277
8FIZ|1|AA|G|1278
8FIZ|1|AA|G|1279
8FIZ|1|AA|A|1280
8FIZ|1|AA|C|1281
8FIZ|1|AA|C|1282

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S14

Chain AG

30S ribosomal protein S3

Chain AH

30S ribosomal protein S10