IL_8FIZ_102

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8FIZ|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_102 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1184

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8FIZ|1|BA|U|1018
8FIZ|1|BA|U|1019
8FIZ|1|BA|A|1020
8FIZ|1|BA|A|1021
8FIZ|1|BA|G|1022
8FIZ|1|BA|U|1023
8FIZ|1|BA|G|1024
*
8FIZ|1|BA|C|1140
8FIZ|1|BA|U|1141
8FIZ|1|BA|A|1142
8FIZ|1|BA|A|1143
8FIZ|1|BA|A|1144

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L36

Chain BR

50S ribosomal protein L13