IL_8FIZ_167

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8FIZ|1|BA|U|2689, 8FIZ|1|BA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_167 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1242

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8FIZ|1|BA|U|2687
8FIZ|1|BA|G|2688
8FIZ|1|BA|U|2689
8FIZ|1|BA|U|2690
8FIZ|1|BA|C|2691
*
8FIZ|1|BA|G|2718
8FIZ|1|BA|G|2719
8FIZ|1|BA|U|2720
8FIZ|1|BA|A|2721
8FIZ|1|BA|G|2722

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BV

50S ribosomal protein L17

Chain BW

50S ribosomal protein L19