IL_8FKP_034

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKP|1|L3|G|748, 8FKP|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_034 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1742

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKP|1|L3|G|745
8FKP|1|L3|A|746
8FKP|1|L3|A|747
8FKP|1|L3|G|748
8FKP|1|L3|G|749
8FKP|1|L3|U|750
8FKP|1|L3|G|751
8FKP|1|L3|G|752
*
8FKP|1|L3|U|911
8FKP|1|L3|G|912
8FKP|1|L3|U|913
8FKP|1|L3|U|914
8FKP|1|L3|A|915
8FKP|1|L3|C|916
8FKP|1|L3|A|917
8FKP|1|L3|G|918
8FKP|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a