IL_8FKP_046
3D structure
- PDB id
- 8FKP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKP_046 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1878
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8FKP|1|L3|C|1911
8FKP|1|L3|G|1912
8FKP|1|L3|C|1913
8FKP|1|L3|C|1914
8FKP|1|L3|C|1915
8FKP|1|L3|G|1916
8FKP|1|L3|A|1917
8FKP|1|L3|U|1918
*
8FKP|1|L3|G|2064
8FKP|1|L3|G|2065
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L7
- 60S ribosomal protein L13a
- Chain LC
- 60S ribosomal protein L18a
- Chain LT
- 60S ribosomal protein L35a
- Chain SD
- 60S ribosomal protein L7
- Chain SN
- Probable rRNA-processing protein EBP2
Coloring options: