IL_8FKP_058

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8FKP|1|L3|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_058 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.3012

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8FKP|1|L3|C|4582
8FKP|1|L3|C|4583
8FKP|1|L3|A|4584
8FKP|1|L3|U|4585
*
8FKP|1|L3|A|4717
8FKP|1|L3|G|4718
8FKP|1|L3|G|4719
8FKP|1|L3|C|4720
8FKP|1|L3|G|4721

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LN

60S ribosomal protein L3